Installation

To install MicroExonator follow these instructions:

Clone repository

Clone the github repository

git clone https://github.com/hemberg-lab/MicroExonator

Install Miniconda 3

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh

Start using conda by opening a new terminal or just running:

bash

Set up a master virtual environment

Create a conda virtual enviroment with the necesary dependencies

conda create -n snakemake_env -c bioconda -c conda-forge snakemake